Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs12669492 chr7:134021292 G/A 6.05E-5 252 32.4 31.1 22.03 KM Plot
SARC rs12714781 chr3:71930936 C/T 1.43E-5 258 18.33 37.63 30.32 KM Plot
SARC rs12787159 chr11:70274191 A/C 3.75E-5 258 22.93 36.27 30.32 KM Plot
SARC rs12787413 chr11:70276346 T/C 6.68E-6 249 30.75 36.33 18.8 KM Plot
SARC rs12795503 chr11:70278573 A/G 5.92E-5 251 30.75 36.27 20.87 KM Plot
SARC rs12799046 chr11:70273001 C/T 2.99E-5 251 28.6 36.33 23.03 KM Plot
SARC rs12800449 chr11:70275975 G/T 3.94E-5 254 29.25 36.33 23.03 KM Plot
SARC rs12801172 chr11:64646034 G/C 9.06E-5 253 33.95 24.6 7.82 KM Plot
SARC rs12801756 chr11:70272042 A/G 7.3E-6 254 29.9 36.33 22.93 KM Plot
SARC rs12802851 chr11:70268910 C/T 2.97E-6 249 30.75 36.47 18.8 KM Plot
SARC rs12804757 chr11:70276009 A/G 8.54E-5 254 30.32 36.02 23.03 KM Plot
SARC rs12877815 chr13:24150136 A/T 7.42E-5 249 33.77 29.47 13.52 KM Plot
SARC rs12919668 chr16:1492213 A/G 0 246 29.88 33.9 0.73 KM Plot
SARC rs12922846 chr16:78174748 A/G 8.84E-6 247 35.67 30.33 14.12 KM Plot
SARC rs12948299 chr17:45403057 T/C 8.79E-5 252 23.17 31.68 32.4 KM Plot